Difference between revisions of "OxdD"

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Revision as of 13:32, 16 May 2013

  • Description: oxalate decarboxylase, spore coat protein

Gene name oxdD
Synonyms yoaN
Essential no
Product oxalate decarboxylase
Function unknown
Gene expression levels in SubtiExpress: oxdD
MW, pI 43 kDa, 5.359
Gene length, protein length 1176 bp, 392 aa
Immediate neighbours yozS, yoaO
Sequences Protein DNA DNA_with_flanks
Genetic context
YoaN context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
OxdD expression.png
























Categories containing this gene/protein

sporulation proteins, resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)

This gene is a member of the following regulons

SigK regulon

The gene

Basic information

  • Locus tag: BSU18670

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Oxalate = formate + CO2 (according to Swiss-Prot)
  • Protein family: UPF0361 family (according to Swiss-Prot)
  • Paralogous protein(s): OxdC

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Regulation:
    • expressed late during sporulation in the mother cell (SigK, GerE) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Original publications