Difference between revisions of "SpsL"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[sivA]]'', ''[[spsK]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[sivA]]'', ''[[spsK]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU37810 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU37810 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU37810 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU37810 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU37810 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU37810 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:spsL_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:spsL_context.gif]]

Revision as of 11:34, 14 May 2013

  • Description: dTDP -4-dehydrorhamnose-3,5-epimerase, spore coat polysaccharide synthesis

Gene name spsL
Synonyms ipa-73d
Essential no
Product dTDP -4-dehydrorhamnose-3,5-epimerase
Function rhamnose biosynthesis, spore coat polysaccharide synthesis
Gene expression levels in SubtiExpress: spsL
MW, pI 17 kDa, 4.878
Gene length, protein length 453 bp, 151 aa
Immediate neighbours sivA, spsK
Sequences Protein DNA DNA_with_flanks
Genetic context
SpsL context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
SpsL expression.png















Categories containing this gene/protein

miscellaneous metabolic pathways, sporulation proteins

This gene is a member of the following regulons

SigK regulon

The gene

Basic information

  • Locus tag: BSU37810

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 3RYK (dTDP-4-dehydrorhamnose 3,5-epimerase (rfbC) from Bacillus anthracis str. Ames with TDP and PPi bound, 32% identity, 56% similarity)
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Regulation:
    • expressed late during sporulation in the mother cell (SigK) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References