Difference between revisions of "YwqJ"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywqK]]'', ''[[ywqI]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywqK]]'', ''[[ywqI]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36190 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36190 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36190 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36190 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36190 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36190 DNA_with_flanks]
 
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|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ywqJ_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ywqJ_context.gif]]

Revision as of 11:27, 14 May 2013

  • Description: putative toxin

Gene name ywqJ
Synonyms
Essential no
Product putative toxin
Function unknown
Gene expression levels in SubtiExpress: ywqJ
MW, pI 66 kDa, 5.906
Gene length, protein length 1806 bp, 602 aa
Immediate neighbours ywqK, ywqI
Sequences Protein DNA DNA_with_flanks
Genetic context
YwqJ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YwqJ expression.png
























Categories containing this gene/protein

toxins, antitoxins and immunity against toxins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU36190

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0720 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Laura E Holberger, Fernando Garza-Sánchez, James Lamoureux, David A Low, Christopher S Hayes
A novel family of toxin/antitoxin proteins in Bacillus species.
FEBS Lett: 2012, 586(2);132-6
[PubMed:22200572] [WorldCat.org] [DOI] (I p)

Elodie Marchadier, Rut Carballido-López, Sophie Brinster, Céline Fabret, Peggy Mervelet, Philippe Bessières, Marie-Françoise Noirot-Gros, Vincent Fromion, Philippe Noirot
An expanded protein-protein interaction network in Bacillus subtilis reveals a group of hubs: Exploration by an integrative approach.
Proteomics: 2011, 11(15);2981-91
[PubMed:21630458] [WorldCat.org] [DOI] (I p)