Difference between revisions of "DegV"
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[comFA]]'', ''[[degU]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[comFA]]'', ''[[degU]]'' | ||
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| − | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU35480 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU35480 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU35480 | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU35480 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU35480 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU35480 DNA_with_flanks] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yviA_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yviA_context.gif]] | ||
Revision as of 11:24, 14 May 2013
- Description: fatty acid binding protein
| Gene name | degV |
| Synonyms | yviA, sacU |
| Essential | no |
| Product | fatty acid binding protein |
| Function | unknown |
| Gene expression levels in SubtiExpress: degV | |
| MW, pI | 31 kDa, 5.227 |
| Gene length, protein length | 843 bp, 281 aa |
| Immediate neighbours | comFA, degU |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
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Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU35480
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Diphosphate + H2O = 2 phosphate (according to Swiss-Prot)
- Protein family: UPF0230 (degV) family (according to Swiss-Prot) PpaX family (according to Swiss-Prot)
- Paralogous protein(s): YitS
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure: 3FYS
- UniProt: P32436
- KEGG entry: [3]
- E.C. number: 3.6.1.1
Additional information
Expression and regulation
- Operon: degV PubMed
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Jie Nan, Yanfeng Zhou, Cheng Yang, Erik Brostromer, Ole Kristensen, Xiao Dong Su
Structure of a fatty-acid-binding protein from Bacillus subtilis determined by sulfur-SAD phasing using in-house chromium radiation.
Acta Crystallogr D Biol Crystallogr: 2009, 65(Pt 5);440-8
[PubMed:19390149]
[WorldCat.org]
[DOI]
(I p)
J A Londoño-Vallejo, D Dubnau
comF, a Bacillus subtilis late competence locus, encodes a protein similar to ATP-dependent RNA/DNA helicases.
Mol Microbiol: 1993, 9(1);119-31
[PubMed:8412657]
[WorldCat.org]
[DOI]
(P p)
