Difference between revisions of "XkdE"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[xtmB]]'', ''[[xkdF]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[xtmB]]'', ''[[xkdF]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU12590 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU12590 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU12590 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU12590 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU12590 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU12590 DNA_with_flanks]
 
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Revision as of 09:59, 14 May 2013

  • Description: PBSX prophage

Gene name xkdE
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: xkdE
MW, pI 56 kDa, 5.172
Gene length, protein length 1485 bp, 495 aa
Immediate neighbours xtmB, xkdF
Sequences Protein DNA DNA_with_flanks
Genetic context
XkdE context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
XkdE expression.png
























Categories containing this gene/protein

PBSX prophage

This gene is a member of the following regulons

Xpf regulon

The gene

Basic information

  • Locus tag: BSU12590

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: PBSX subfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant: GP1171 (ermC) available in the Stülke lab
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

G E McDonnell, H Wood, K M Devine, D J McConnell
Genetic control of bacterial suicide: regulation of the induction of PBSX in Bacillus subtilis.
J Bacteriol: 1994, 176(18);5820-30
[PubMed:8083174] [WorldCat.org] [DOI] (P p)

H E Wood, M T Dawson, K M Devine, D J McConnell
Characterization of PBSX, a defective prophage of Bacillus subtilis.
J Bacteriol: 1990, 172(5);2667-74
[PubMed:2110147] [WorldCat.org] [DOI] (P p)