Difference between revisions of "TruA"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ybaF]]'', ''[[rplM]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ybaF]]'', ''[[rplM]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU01480 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU01480 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU01480 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU01480 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU01480 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU01480 DNA_with_flanks]
 
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Revision as of 09:18, 14 May 2013

Gene name truA
Synonyms ybaH
Essential no
Product pseudouridylate synthase I
Function tRNA modification
Gene expression levels in SubtiExpress: truA
MW, pI 27 kDa, 6.652
Gene length, protein length 741 bp, 247 aa
Immediate neighbours ybaF, rplM
Sequences Protein DNA DNA_with_flanks
Genetic context
TruA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
TruA expression.png
























Categories containing this gene/protein

translation, universally conserved proteins

This gene is a member of the following regulons

stringent response

The gene

Basic information

  • Locus tag: BSU01480

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: tRNA uridine = tRNA pseudouridine (according to Swiss-Prot)
  • Protein family: tRNA pseudouridine synthase truA family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

universally conserved protein

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References