Difference between revisions of "YxlD"

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|style="background:#ABCDEF;" align="center"|'''Function''' || negative regulation of [[SigY]]-directed transcription of the ''[[sigY]]'' operon
 
|style="background:#ABCDEF;" align="center"|'''Function''' || negative regulation of [[SigY]]-directed transcription of the ''[[sigY]]'' operon
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU38680 yxlD]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38680 yxlD]
 
|-
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 7 kDa, 10.271   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 7 kDa, 10.271   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxlE]]'', ''[[yxlC]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxlE]]'', ''[[yxlC]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15894&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38680 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38680 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38680 Advanced_DNA]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yxlD_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yxlD_context.gif]]

Revision as of 14:12, 13 May 2013

  • Description: negative regulation of SigY-directed transcription of the sigY operon

Gene name yxlD
Synonyms
Essential no
Product unknown
Function negative regulation of SigY-directed transcription of the sigY operon
Gene expression levels in SubtiExpress: yxlD
MW, pI 7 kDa, 10.271
Gene length, protein length 204 bp, 68 aa
Immediate neighbours yxlE, yxlC
Sequences Protein DNA Advanced_DNA
Genetic context
YxlD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YxlD expression.png
























Categories containing this gene/protein

sigma factors and their control, cell envelope stress proteins (controlled by SigM, V, W, X, Y)

This gene is a member of the following regulons

SigY regulon

The gene

Basic information

  • Locus tag: BSU38680

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Shigeo Tojo, Masayuki Matsunaga, Takashi Matsumoto, Choong-Min Kang, Hirotake Yamaguchi, Kei Asai, Yoshito Sadaie, Ken-ichi Yoshida, Yasutaro Fujita
Organization and expression of the Bacillus subtilis sigY operon.
J Biochem: 2003, 134(6);935-46
[PubMed:14769884] [WorldCat.org] [DOI] (P p)

Min Cao, Letal Salzberg, Ching Sung Tsai, Thorsten Mascher, Carla Bonilla, Tao Wang, Rick W Ye, Leticia Márquez-Magaña, John D Helmann
Regulation of the Bacillus subtilis extracytoplasmic function protein sigma(Y) and its target promoters.
J Bacteriol: 2003, 185(16);4883-90
[PubMed:12897008] [WorldCat.org] [DOI] (P p)