Difference between revisions of "RodA"

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|style="background:#ABCDEF;" align="center"|'''Function''' || control of cell shape and elongation
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of cell shape and elongation
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU38120 rodA]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38120 rodA]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 43 kDa, 8.759   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 43 kDa, 8.759   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[nfrA]]'', ''[[ywcE]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[nfrA]]'', ''[[ywcE]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15838&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38120 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38120 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38120 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:rodA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:rodA_context.gif]]

Revision as of 14:10, 13 May 2013

  • Description: control of cell shape and elongation

Gene name rodA
Synonyms ywcF, ipa-42d
Essential yes PubMed
Product SEDS protein
Function control of cell shape and elongation
Gene expression levels in SubtiExpress: rodA
MW, pI 43 kDa, 8.759
Gene length, protein length 1179 bp, 393 aa
Immediate neighbours nfrA, ywcE
Sequences Protein DNA Advanced_DNA
Genetic context
RodA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
RodA expression.png
























Categories containing this gene/protein

cell shape, cell envelope stress proteins (controlled by SigM, V, W, X, Y), essential genes, membrane proteins

This gene is a member of the following regulons

SigM regulon

The gene

Basic information

  • Locus tag: BSU38120

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ftsW/rodA/spoVE family (according to Swiss-Prot) SEDS proteins (shape, elongation, division, and sporulation)

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References