Difference between revisions of "Fnr"

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|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of anaerobiosis, fermentation and overflow metabolism
 
|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of anaerobiosis, fermentation and overflow metabolism
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU37310 fnr]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU37310 fnr]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Alternative nitrogen sources]'''
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Alternative nitrogen sources]'''
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywiC]]'', ''[[narK]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywiC]]'', ''[[narK]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15759&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU37310 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU37310 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU37310 Advanced_DNA]
 
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|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:fnr_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:fnr_context.gif]]

Revision as of 14:06, 13 May 2013

  • Description: transcriptional regulator of anaerobic genes

Gene name fnr
Synonyms
Essential no
Product transcription regulator (Crp family)
Function regulation of anaerobiosis, fermentation and overflow metabolism
Gene expression levels in SubtiExpress: fnr
Metabolic function and regulation of this protein in SubtiPathways:
Alternative nitrogen sources
MW, pI 27 kDa, 5.989
Gene length, protein length 714 bp, 238 aa
Immediate neighbours ywiC, narK
Sequences Protein DNA Advanced_DNA
Genetic context
Fnr context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
Fnr expression.png















Categories containing this gene/protein

regulators of electron transport, transcription factors and their control

This gene is a member of the following regulons

Fnr regulon, NsrR regulon, ResD regulon

The Fnr regulon

The gene

Basic information

  • Locus tag: BSU37310

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Genes/ operons controlled by Fnr

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity: contains an iron-sulfur cluster

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Elisabeth Härtig, Dieter Jahn
Regulation of the anaerobic metabolism in Bacillus subtilis.
Adv Microb Physiol: 2012, 61;195-216
[PubMed:23046954] [WorldCat.org] [DOI] (I p)

The Fnr regulon

Heike Reents, Richard Münch, Thorben Dammeyer, Dieter Jahn, Elisabeth Härtig
The Fnr regulon of Bacillus subtilis.
J Bacteriol: 2006, 188(3);1103-12
[PubMed:16428414] [WorldCat.org] [DOI] (P p)

Other original publications