Difference between revisions of "AtpF"

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|style="background:#ABCDEF;" align="center"|'''Function''' || ATP synthesis  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || ATP synthesis  
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU36850 atpF]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36850 atpF]
 
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|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 19 kDa, 4.921   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 19 kDa, 4.921   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[atpH]]'', ''[[atpE]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[atpH]]'', ''[[atpE]]''
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15702&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36850 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36850 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36850 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:atpF_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:atpF_context.gif]]

Revision as of 14:04, 13 May 2013

  • Description: ATP synthase (subunit b)

Gene name atpF
Synonyms
Essential no
Product ATP synthase (subunit b))
Function ATP synthesis
Gene expression levels in SubtiExpress: atpF
MW, pI 19 kDa, 4.921
Gene length, protein length 510 bp, 170 aa
Immediate neighbours atpH, atpE
Sequences Protein DNA Advanced_DNA
Genetic context
AtpF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
AtpF expression.png
























Categories containing this gene/protein

ATP synthesis, membrane proteins

This gene is a member of the following regulons

stringent response

The gene

Basic information

  • Locus tag: BSU36850

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: ATP synthesis see a video
  • Protein family: ATPase B chain family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Hannes Hahne, Susanne Wolff, Michael Hecker, Dörte Becher
From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches.
Proteomics: 2008, 8(19);4123-36
[PubMed:18763711] [WorldCat.org] [DOI] (I p)

M Santana, M S Ionescu, A Vertes, R Longin, F Kunst, A Danchin, P Glaser
Bacillus subtilis F0F1 ATPase: DNA sequence of the atp operon and characterization of atp mutants.
J Bacteriol: 1994, 176(22);6802-11
[PubMed:7961438] [WorldCat.org] [DOI] (P p)