Difference between revisions of "YvdF"

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|style="background:#ABCDEF;" align="center"|'''Function''' || starch and maltodextrin utilization
 
|style="background:#ABCDEF;" align="center"|'''Function''' || starch and maltodextrin utilization
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU34620 yvdF]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU34620 yvdF]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbohydrate_metabolic_pathways.html Sugar catabolism]'''
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbohydrate_metabolic_pathways.html Sugar catabolism]'''
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mdxE]]'', ''[[yvdE]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mdxE]]'', ''[[yvdE]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15467&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU34620 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU34620 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU34620 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yvdF_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yvdF_context.gif]]

Revision as of 13:56, 13 May 2013

  • Description: glucan 1,4-alpha-maltohydrolase, neopullulanase, maltogenic amylase

Gene name yvdF
Synonyms
Essential no
Product glucan 1,4-alpha-maltohydrolase, neopullulanase,
maltogenic amylase
Function starch and maltodextrin utilization
Gene expression levels in SubtiExpress: yvdF
Metabolic function and regulation of this protein in SubtiPathways:
Sugar catabolism
MW, pI 68 kDa, 5.178
Gene length, protein length 1767 bp, 589 aa
Immediate neighbours mdxE, yvdE
Sequences Protein DNA Advanced_DNA
Genetic context
YvdF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YvdF expression.png




























Categories containing this gene/protein

utilization of specific carbon sources, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU34620

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: BbmA subfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Localization:
    • on both sides of the cytoplasmic membrane and in the periplasm during vegetative growth but in the cytoplasm of prespores PubMed

Database entries

  • Structure: 1J0J (from G. stearothermophilus, 56% identity, complex with maltotetraose), 1J0H (from G. stearothermophilus, 56% identity)
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References