Difference between revisions of "CotI"

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|style="background:#ABCDEF;" align="center"|'''Function''' || spore envelope
 
|style="background:#ABCDEF;" align="center"|'''Function''' || spore envelope
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU30920 cotI]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU30920 cotI]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 41 kDa, 4.989   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 41 kDa, 4.989   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cotSA]]'', ''[[ytaB]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cotSA]]'', ''[[ytaB]]''
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15070&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU30920 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU30920 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU30920 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ytaA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ytaA_context.gif]]

Revision as of 13:41, 13 May 2013

  • Description: spore coat protein

Gene name cotI
Synonyms ytaA
Essential no
Product spore coat protein
Function spore envelope
Gene expression levels in SubtiExpress: cotI
MW, pI 41 kDa, 4.989
Gene length, protein length 1071 bp, 357 aa
Immediate neighbours cotSA, ytaB
Sequences Protein DNA Advanced_DNA
Genetic context
YtaA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
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Categories containing this gene/protein

sporulation proteins

This gene is a member of the following regulons

SigK regulon

The gene

Basic information

  • Locus tag: BSU30920

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: cotS family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed late during sporulation in the mother cell (SigK) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Eric D Scheeff, Herbert L Axelrod, Mitchell D Miller, Hsiu-Ju Chiu, Ashley M Deacon, Ian A Wilson, Gerard Manning
Genomics, evolution, and crystal structure of a new family of bacterial spore kinases.
Proteins: 2010, 78(6);1470-82
[PubMed:20077512] [WorldCat.org] [DOI] (I p)

Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190] [WorldCat.org] [DOI] (P p)

Erh-Min Lai, Nikhil D Phadke, Maureen T Kachman, Rebecca Giorno, Santiago Vazquez, Jenny A Vazquez, Janine R Maddock, Adam Driks
Proteomic analysis of the spore coats of Bacillus subtilis and Bacillus anthracis.
J Bacteriol: 2003, 185(4);1443-54
[PubMed:12562816] [WorldCat.org] [DOI] (P p)

Ritsuko Kuwana, Yasuhiro Kasahara, Machiko Fujibayashi, Hiromu Takamatsu, Naotake Ogasawara, Kazuhito Watabe
Proteomics characterization of novel spore proteins of Bacillus subtilis.
Microbiology (Reading): 2002, 148(Pt 12);3971-3982
[PubMed:12480901] [WorldCat.org] [DOI] (P p)