Difference between revisions of "RpsD"
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|style="background:#ABCDEF;" align="center"|'''Function''' || [[translation]] | |style="background:#ABCDEF;" align="center"|'''Function''' || [[translation]] | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU29660 rpsD] |
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RpsD RpsD] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RpsD RpsD] | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ytrP]]'', ''[[tyrS]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ytrP]]'', ''[[tyrS]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU29660 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU29660 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU29660 Advanced_DNA] |
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|colspan="2" | '''Genetic context''' <br/> [[Image:rpsD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:rpsD_context.gif]] | ||
Revision as of 13:36, 13 May 2013
- Description: ribosomal protein
| Gene name | rpsD |
| Synonyms | |
| Essential | yes PubMed |
| Product | ribosomal protein S4 (BS4) |
| Function | translation |
| Gene expression levels in SubtiExpress: rpsD | |
| Interactions involving this protein in SubtInteract: RpsD | |
| MW, pI | 22 kDa, 10.243 |
| Gene length, protein length | 600 bp, 200 aa |
| Immediate neighbours | ytrP, tyrS |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
translation, essential genes, universally conserved proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU29660
Phenotypes of a mutant
essential PubMed
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: ribosomal protein S4P family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure: 1C06 (Geobacillus stearothermophilus)
- UniProt: P21466
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- RelA dependent downregulation (Class I) during stringent response PubMed
- autorepression of rpsD expression upon binding of excess RpsD to a RNA switch in the untranslated region of the rpsD mRNA PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
