Difference between revisions of "YrvJ"
| Line 14: | Line 14: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || cell wall metabolism | |style="background:#ABCDEF;" align="center"|'''Function''' || cell wall metabolism | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU27580 yrvJ] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 55 kDa, 5.192 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 55 kDa, 5.192 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yrzK]]'', ''[[yrvI]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yrzK]]'', ''[[yrvI]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU27580 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU27580 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU27580 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yrvJ_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yrvJ_context.gif]] | ||
Revision as of 13:27, 13 May 2013
- Description: similar to N-acetylmuramoyl-L-alanine amidase
| Gene name | yrvJ |
| Synonyms | |
| Essential | no |
| Product | peptidoglycan hydrolase |
| Function | cell wall metabolism |
| Gene expression levels in SubtiExpress: yrvJ | |
| MW, pI | 55 kDa, 5.192 |
| Gene length, protein length | 1554 bp, 518 aa |
| Immediate neighbours | yrzK, yrvI |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU27580
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Hydrolyzes the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides (according to Swiss-Prot)
- Protein family: N-acetylmuramoyl-L-alanine amidase 3 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: O32041
- KEGG entry: [3]
- E.C. number: 3.5.1.28
Additional information
Expression and regulation
- Operon: yrvJ PubMed
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
T M Wendrich, M A Marahiel
Cloning and characterization of a relA/spoT homologue from Bacillus subtilis.
Mol Microbiol: 1997, 26(1);65-79
[PubMed:9383190]
[WorldCat.org]
[DOI]
(P p)
