Difference between revisions of "YpsC"
| Line 14: | Line 14: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || rRNA modification | |style="background:#ABCDEF;" align="center"|'''Function''' || rRNA modification | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU22170 ypsC] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 43 kDa, 8.011 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 43 kDa, 8.011 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypzG]]'', ''[[rnpB]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypzG]]'', ''[[rnpB]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22170 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22170 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22170 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:ypsC_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ypsC_context.gif]] | ||
Revision as of 13:07, 13 May 2013
- Description: similar to SAM-dependent 23S rRNA methyltransferase
| Gene name | ypsC |
| Synonyms | |
| Essential | no |
| Product | 23S rRNA methyltransferase |
| Function | rRNA modification |
| Gene expression levels in SubtiExpress: ypsC | |
| MW, pI | 43 kDa, 8.011 |
| Gene length, protein length | 1155 bp, 385 aa |
| Immediate neighbours | ypzG, rnpB |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU22170
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- YpsC interacts with the RNA polymerase PubMed
- Localization:
Database entries
- Structure:
- UniProt: P50840
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
Dmitry V Lesnyak, Petr V Sergiev, Alexey A Bogdanov, Olga A Dontsova
Identification of Escherichia coli m2G methyltransferases: I. the ycbY gene encodes a methyltransferase specific for G2445 of the 23 S rRNA.
J Mol Biol: 2006, 364(1);20-5
[PubMed:17010378]
[WorldCat.org]
[DOI]
(P p)
