Difference between revisions of "KduD"
| Line 14: | Line 14: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || utilization of galacturonic acid | |style="background:#ABCDEF;" align="center"|'''Function''' || utilization of galacturonic acid | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU22140 kduD] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 6.498 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 6.498 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[kduI]]'', ''[[ypvA]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[kduI]]'', ''[[ypvA]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22140 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22140 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22140 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:kduD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:kduD_context.gif]] | ||
Revision as of 13:07, 13 May 2013
- Description: 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase
| Gene name | kduD |
| Synonyms | |
| Essential | no |
| Product | |
| Function | utilization of galacturonic acid |
| Gene expression levels in SubtiExpress: kduD | |
| MW, pI | 27 kDa, 6.498 |
| Gene length, protein length | 762 bp, 254 aa |
| Immediate neighbours | kduI, ypvA |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
utilization of specific carbon sources
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU22140
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: 2-deoxy-D-gluconate + NAD+ = 3-dehydro-2-deoxy-D-gluconate + NADH (according to Swiss-Prot)
- Protein family: phosphopentomutase family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P50842
- KEGG entry: [2]
- E.C. number: 1.1.1.125
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Jer-Sheng Lin, Gwo-Chyuan Shaw
Regulation of the kduID operon of Bacillus subtilis by the KdgR repressor and the ccpA gene: identification of two KdgR-binding sites within the kdgR-kduI intergenic region.
Microbiology (Reading): 2007, 153(Pt 3);701-710
[PubMed:17322190]
[WorldCat.org]
[DOI]
(P p)
