Difference between revisions of "YlmD"

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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU15370 ylmD]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15370 ylmD]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 6.177   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 6.177   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ylmC]]'', ''[[ylmE]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ylmC]]'', ''[[ylmE]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13411&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15370 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15370 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15370 Advanced_DNA]
 
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Revision as of 12:46, 13 May 2013

  • Description: unknown

Gene name ylmD
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ylmD
MW, pI 30 kDa, 6.177
Gene length, protein length 834 bp, 278 aa
Immediate neighbours ylmC, ylmE
Sequences Protein DNA Advanced_DNA
Genetic context
YlmD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YlmD expression.png
























Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

Spo0A regulon

The gene

Basic information

  • Locus tag: BSU15370

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

  • The E.coli homolog: yfiH

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0124 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • repressed under conditions that trigger sporulation (Spo0A) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Leendert W Hamoen, Jean-Christophe Meile, Wouter de Jong, Philippe Noirot, Jeff Errington
SepF, a novel FtsZ-interacting protein required for a late step in cell division.
Mol Microbiol: 2006, 59(3);989-99
[PubMed:16420366] [WorldCat.org] [DOI] (P p)

Virginie Molle, Masaya Fujita, Shane T Jensen, Patrick Eichenberger, José E González-Pastor, Jun S Liu, Richard Losick
The Spo0A regulon of Bacillus subtilis.
Mol Microbiol: 2003, 50(5);1683-701
[PubMed:14651647] [WorldCat.org] [DOI] (P p)