Difference between revisions of "RpoY"

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|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[RNA polymerase]] activity
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[RNA polymerase]] activity
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU14540 ykzG]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU14540 ykzG]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 8 kDa, 4.605   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 8 kDa, 4.605   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rnjA]]'', ''[[ykrA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rnjA]]'', ''[[ykrA]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13327&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU14540 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU14540 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU14540 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ykzG_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ykzG_context.gif]]

Revision as of 12:43, 13 May 2013

Gene name ykzG
Synonyms
Essential no
Product epsilon subunit of RNA polymerase
Function control of RNA polymerase activity
Gene expression levels in SubtiExpress: ykzG
MW, pI 8 kDa, 4.605
Gene length, protein length 207 bp, 69 aa
Immediate neighbours rnjA, ykrA
Sequences Protein DNA Advanced_DNA
Genetic context
YkzG context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YkzG expression.png















Categories containing this gene/protein

transcription

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU14540

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein is sometimes annotated as omega1 subunit of RNA polymerase, however, there is no experimental evidence in support of this ("it is unrelated in sequence to ω/Rpb6 from the eubacteria, archaea and eukaryotes, unpublished data suggests it does not bind at the same site as ω/Rpb6 subunits bind their cognate RNAPs, and therefore it is unlikely to function as a true ω subunit") PubMed


The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0356 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion: pGP420 (in pAC7), available in Stülke lab
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed