Difference between revisions of "YkvU"

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|style="background:#ABCDEF;" align="center"|'''Function''' || germination at high pressure
 
|style="background:#ABCDEF;" align="center"|'''Function''' || germination at high pressure
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU13830 ykvU]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU13830 ykvU]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 49 kDa, 9.551   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 49 kDa, 9.551   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ykvT]]'', ''[[stoA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ykvT]]'', ''[[stoA]]''
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13256&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU13830 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU13830 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU13830 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ykvU_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ykvU_context.gif]]

Revision as of 12:40, 13 May 2013

  • Description: spore cortex membrane protein, required for germination at high pressure

Gene name ykvU
Synonyms
Essential no
Product spore cortex membrane protein
Function germination at high pressure
Gene expression levels in SubtiExpress: ykvU
MW, pI 49 kDa, 9.551
Gene length, protein length 1335 bp, 445 aa
Immediate neighbours ykvT, stoA
Sequences Protein DNA Advanced_DNA
Genetic context
YkvU context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YkvU expression.png
























Categories containing this gene/protein

germination, membrane proteins

This gene is a member of the following regulons

SigE regulon

The gene

Basic information

  • Locus tag: BSU13830

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed early during sporulation in the mother cell (SigE) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Allison Fay, Jonathan Dworkin
Bacillus subtilis homologs of MviN (MurJ), the putative Escherichia coli lipid II flippase, are not essential for growth.
J Bacteriol: 2009, 191(19);6020-8
[PubMed:19666716] [WorldCat.org] [DOI] (I p)

Pradeep Vasudevan, Jessica McElligott, Christa Attkisson, Michael Betteken, David L Popham
Homologues of the Bacillus subtilis SpoVB protein are involved in cell wall metabolism.
J Bacteriol: 2009, 191(19);6012-9
[PubMed:19648239] [WorldCat.org] [DOI] (I p)

Abram Aertsen, Isabelle Van Opstal, Suzy C Vanmuysen, Elke Y Wuytack, Chris W Michiels
Screening for Bacillus subtilis mutants deficient in pressure induced spore germination: identification of ykvU as a novel germination gene.
FEMS Microbiol Lett: 2005, 243(2);385-91
[PubMed:15686839] [WorldCat.org] [DOI] (P p)

Daisuke Imamura, Kazuo Kobayashi, Junichi Sekiguchi, Naotake Ogasawara, Michio Takeuchi, Tsutomu Sato
spoIVH (ykvV), a requisite cortex formation gene, is expressed in both sporulating compartments of Bacillus subtilis.
J Bacteriol: 2004, 186(16);5450-9
[PubMed:15292147] [WorldCat.org] [DOI] (P p)

Patrick Eichenberger, Shane T Jensen, Erin M Conlon, Christiaan van Ooij, Jessica Silvaggi, José Eduardo González-Pastor, Masaya Fujita, Sigal Ben-Yehuda, Patrick Stragier, Jun S Liu, Richard Losick
The sigmaE regulon and the identification of additional sporulation genes in Bacillus subtilis.
J Mol Biol: 2003, 327(5);945-72
[PubMed:12662922] [WorldCat.org] [DOI] (P p)