Difference between revisions of "YhcR"

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|style="background:#ABCDEF;" align="center"|'''Function''' || utilization of nucleic acids
 
|style="background:#ABCDEF;" align="center"|'''Function''' || utilization of nucleic acids
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU09190 yhcR]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU09190 yhcR]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YhcR YhcR]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YhcR YhcR]
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yhcQ]]'', ''[[yhcS]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yhcQ]]'', ''[[yhcS]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12747&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU09190 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU09190 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU09190 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yhcR_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yhcR_context.gif]]

Revision as of 12:25, 13 May 2013

  • Description: extracellular non-specific endonuclease, Rnase

Gene name yhcR
Synonyms
Essential no
Product extracellular non-specific endonuclease, Rnase
Function utilization of nucleic acids
Gene expression levels in SubtiExpress: yhcR
Interactions involving this protein in SubtInteract: YhcR
MW, pI 132 kDa, 4.693
Gene length, protein length 3651 bp, 1217 aa
Immediate neighbours yhcQ, yhcS
Sequences Protein DNA Advanced_DNA
Genetic context
YhcR context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YhcR expression.png
























Categories containing this gene/protein

biosynthesis/ acquisition of nucleotides, Rnases

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU09190

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s): YfkN

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

David Bechhofer, Mount Sinai School, New York, USA Homepage

Your additional remarks

References

Additional referencecs: PubMed

Hamidreza Fasehee, Helga Westers, Albert Bolhuis, Haike Antelmann, Michael Hecker, Wim J Quax, Agha F Mirlohi, Jan Maareten van Dijl, Gholamreza Ahmadian
Functional analysis of the sortase YhcS in Bacillus subtilis.
Proteomics: 2011, 11(19);3905-13
[PubMed:21800427] [WorldCat.org] [DOI] (I p)

Birgit Voigt, Haike Antelmann, Dirk Albrecht, Armin Ehrenreich, Karl-Heinz Maurer, Stefan Evers, Gerhard Gottschalk, Jan Maarten van Dijl, Thomas Schweder, Michael Hecker
Cell physiology and protein secretion of Bacillus licheniformis compared to Bacillus subtilis.
J Mol Microbiol Biotechnol: 2009, 16(1-2);53-68
[PubMed:18957862] [WorldCat.org] [DOI] (I p)

Irina A Oussenko, Roberto Sanchez, David H Bechhofer
Bacillus subtilis YhcR, a high-molecular-weight, nonspecific endonuclease with a unique domain structure.
J Bacteriol: 2004, 186(16);5376-83
[PubMed:15292138] [WorldCat.org] [DOI] (P p)