Difference between revisions of "YcbC"
| Line 14: | Line 14: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || utilization of D-glucarate/galactarate | |style="background:#ABCDEF;" align="center"|'''Function''' || utilization of D-glucarate/galactarate | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU02460 ycbC] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 33 kDa, 5.375 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 33 kDa, 5.375 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[glnL]]'', ''[[ycbD]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[glnL]]'', ''[[ycbD]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02460 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02460 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02460 Advanced_DNA] |
|- | |- | ||
|- | |- | ||
Revision as of 12:03, 13 May 2013
- Description: 5-dehydro-4-deoxyglucarate dehydratase
| Gene name | ycbC |
| Synonyms | |
| Essential | no |
| Product | 5-dehydro-4-deoxyglucarate dehydratase |
| Function | utilization of D-glucarate/galactarate |
| Gene expression levels in SubtiExpress: ycbC | |
| MW, pI | 33 kDa, 5.375 |
| Gene length, protein length | 924 bp, 308 aa |
| Immediate neighbours | glnL, ycbD |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
utilization of specific carbon sources
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU02460
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: 5-dehydro-4-deoxy-D-glucarate = 2,5-dioxopentanoate + H2O + CO2 (according to Swiss-Prot)
- Protein family: DHDPS family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P42235
- KEGG entry: [3]
- E.C. number: 4.2.1.41
Additional information
Expression and regulation
- Sigma factor:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Shigeo Hosoya, Kunio Yamane, Michio Takeuchi, Tsutomu Sato
Identification and characterization of the Bacillus subtilis D-glucarate/galactarate utilization operon ycbCDEFGHJ.
FEMS Microbiol Lett: 2002, 210(2);193-9
[PubMed:12044674]
[WorldCat.org]
[DOI]
(P p)
