Difference between revisions of "GamR"
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|style="background:#ABCDEF;" align="center"|'''Function''' || putatively regulation of the ''[[gamA]]-[[gamP]]'' operon | |style="background:#ABCDEF;" align="center"|'''Function''' || putatively regulation of the ''[[gamA]]-[[gamP]]'' operon | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU02370 ybgA] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 26 kDa, 5.559 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 26 kDa, 5.559 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gamA]]'', ''[[ybgB]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gamA]]'', ''[[ybgB]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02370 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02370 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02370 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:ybgA_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ybgA_context.gif]] | ||
Revision as of 12:02, 13 May 2013
- Description: similar to transcriptional regulator (GntR family)
| Gene name | ybgA |
| Synonyms | |
| Essential | no |
| Product | transcriptional regulator (GntR family) |
| Function | putatively regulation of the gamA-gamP operon |
| Gene expression levels in SubtiExpress: ybgA | |
| MW, pI | 26 kDa, 5.559 |
| Gene length, protein length | 705 bp, 235 aa |
| Immediate neighbours | gamA, ybgB |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
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Contents
Categories containing this gene/protein
cell wall degradation/ turnover, utilization of specific carbon sources, transcription factors and their control
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU02370
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O31459
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Jonathan Reizer, Steffi Bachem, Aiala Reizer, Maryvonne Arnaud, Milton H Saier, Jörg Stülke
Novel phosphotransferase system genes revealed by genome analysis - the complete complement of PTS proteins encoded within the genome of Bacillus subtilis.
Microbiology (Reading): 1999, 145 ( Pt 12);3419-3429
[PubMed:10627040]
[WorldCat.org]
[DOI]
(P p)
