Difference between revisions of "SkfF"
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|style="background:#ABCDEF;" align="center"|'''Function''' || export of the spore killing factor [[SkfA]] | |style="background:#ABCDEF;" align="center"|'''Function''' || export of the spore killing factor [[SkfA]] | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU01960 skfF] |
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SkfF SkfF] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SkfF SkfF] | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[skfE]]'', ''[[skfG]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[skfE]]'', ''[[skfG]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU01960 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU01960 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU01960 Advanced_DNA] |
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Revision as of 12:01, 13 May 2013
- Description: ABC transporter (permease), export of the spore killing factor
| Gene name | skfF |
| Synonyms | ybdB |
| Essential | no |
| Product | ABC transporter (permease) |
| Function | export of the spore killing factor SkfA |
| Gene expression levels in SubtiExpress: skfF | |
| Interactions involving this protein in SubtInteract: SkfF | |
| MW, pI | 51 kDa, 9.222 |
| Gene length, protein length | 1344 bp, 448 aa |
| Immediate neighbours | skfE, skfG |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
ABC transporters, toxins, antitoxins and immunity against toxins, membrane proteins
This gene is a member of the following regulons
AbrB regulon, PhoP regulon, Spo0A regulon
The gene
Basic information
- Locus tag: BSU01960
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O31428
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information: Northern blotting during during phosphate limitation showed an intense 0.25 kb skfA-specific transcript, and a weaker 6.5 kb skfA-skfB-skfC-skfE-skfF-skfG-skfH transcript. PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
José Eduardo González-Pastor
Cannibalism: a social behavior in sporulating Bacillus subtilis.
FEMS Microbiol Rev: 2011, 35(3);415-24
[PubMed:20955377]
[WorldCat.org]
[DOI]
(I p)
Original Publications
