Difference between revisions of "YabN"

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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU00580 yabN]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00580 yabN]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 55 kDa, 4.508   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 55 kDa, 4.508   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabM]]'', ''[[yabO]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabM]]'', ''[[yabO]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB11834&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00580 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00580 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00580 Advanced_DNA]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yabN_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yabN_context.gif]]

Revision as of 11:55, 13 May 2013

  • Description: similar to nucleoside triphosphate pyrophosphohydrolase

Gene name yabN
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yabN
MW, pI 55 kDa, 4.508
Gene length, protein length 1467 bp, 489 aa
Immediate neighbours yabM, yabO
Sequences Protein DNA Advanced_DNA
Genetic context
YabN context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YabN expression.png















Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU00580

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

  • The E.coli homolog: mazG

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
    • contains a domain similar to E. coli mazG (nucleoside pyrophosphohydrolase) at the C-terminus (aa 240-480)
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Kei Asai, Hiromu Takamatsu, Megumi Iwano, Takeko Kodama, Kazuhito Watabe, Naotake Ogasawara
The Bacillus subtilis yabQ gene is essential for formation of the spore cortex.
Microbiology (Reading): 2001, 147(Pt 4);919-927
[PubMed:11283287] [WorldCat.org] [DOI] (P p)