Difference between revisions of "YtcC"

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* '''Description:''' sporulation protein, similar to lipopolysaccharide N-acetylglucosaminyltransferase <br/><br/>
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* '''Description:''' [[sporulation]] protein, similar to lipopolysaccharide N-acetylglucosaminyltransferase <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || sporulation protein
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|style="background:#ABCDEF;" align="center"| '''Product''' || [[sporulation]] protein
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || lipopolysaccharide biosynthesis
 
|style="background:#ABCDEF;" align="center"|'''Function''' || lipopolysaccharide biosynthesis
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<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
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<br/><br/><br/><br/>
 
 
 
 
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= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[SigK regulon]]}}
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{{SubtiWiki regulon|[[SigK regulon]]}},
 +
[[Efp-dependent proteins]]
  
 
=The gene=
 
=The gene=
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* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:'''
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* '''[[SubtInteract|Interactions]]:'''
  
* '''Localization:'''
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* '''[[Localization]]:'''
  
 
=== Database entries ===
 
=== Database entries ===
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ytcC_3157961_3159184_1 ytcC] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ytcC_3157961_3159184_1 ytcC] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigK]] {{PubMed|15699190,12480901}}
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* '''[[Sigma factor]]:''' [[SigK]] {{PubMed|15699190,12480901}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
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* '''Additional information:'''
 
* '''Additional information:'''
 +
** [[translation]] is likely to require [[Efp]] due to the presence of several consecutive proline residues {{PubMed|23239624,23239623}}
 +
  
 
=Biological materials =
 
=Biological materials =

Revision as of 19:48, 29 April 2013

  • Description: sporulation protein, similar to lipopolysaccharide N-acetylglucosaminyltransferase

Gene name ytcC
Synonyms
Essential no
Product sporulation protein
Function lipopolysaccharide biosynthesis
Gene expression levels in SubtiExpress: ytcC
MW, pI 45 kDa, 9.588
Gene length, protein length 1221 bp, 407 aa
Immediate neighbours ytcB, ytxO
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YtcC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YtcC expression.png















Categories containing this gene/protein

sporulation proteins

This gene is a member of the following regulons

SigK regulon, Efp-dependent proteins

The gene

Basic information

  • Locus tag: BSU30880

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s): CotSA

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed late during sporulation in the mother cell (SigK) PubMed
  • Regulatory mechanism:
  • Additional information:
    • translation is likely to require Efp due to the presence of several consecutive proline residues PubMed


Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190] [WorldCat.org] [DOI] (P p)

Ritsuko Kuwana, Yasuhiro Kasahara, Machiko Fujibayashi, Hiromu Takamatsu, Naotake Ogasawara, Kazuhito Watabe
Proteomics characterization of novel spore proteins of Bacillus subtilis.
Microbiology (Reading): 2002, 148(Pt 12);3971-3982
[PubMed:12480901] [WorldCat.org] [DOI] (P p)