Difference between revisions of "YodR"
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
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* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
| − | * '''Interactions:''' | + | * '''[[SubtInteract|Interactions]]:''' |
| − | * '''Localization:''' | + | * '''[[Localization]]:''' |
=== Database entries === | === Database entries === | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yodR_2143022_2143675_-1 yodR] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yodR_2143022_2143675_-1 yodR] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigE]] {{PubMed|14523133}} | + | * '''[[Sigma factor]]:''' [[SigE]] {{PubMed|14523133}} |
* '''Regulation:''' expressed early during sporuation in the mother cell ([[SigE]]) {{PubMed|14523133}} | * '''Regulation:''' expressed early during sporuation in the mother cell ([[SigE]]) {{PubMed|14523133}} | ||
Revision as of 21:21, 15 March 2013
- Description: similar to butyrate-acetoacetate CoA-transferase
| Gene name | yodR |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: yodR | |
| MW, pI | 23 kDa, 6.107 |
| Gene length, protein length | 651 bp, 217 aa |
| Immediate neighbours | yodQ, yodS |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
<
Categories containing this gene/protein
sporulation proteins, poorly characterized/ putative enzymes
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU19720
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Butanoyl-CoA + acetoacetate = butanoate + acetoacetyl-CoA (according to Swiss-Prot)
- Protein family: cry6A endotoxin family (according to Swiss-Prot)
- Paralogous protein(s): ScoB
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O34466
- KEGG entry: [2]
- E.C. number: 2.8.3.9
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Andrea Feucht, Louise Evans, Jeff Errington
Identification of sporulation genes by genome-wide analysis of the sigmaE regulon of Bacillus subtilis.
Microbiology (Reading): 2003, 149(Pt 10);3023-3034
[PubMed:14523133]
[WorldCat.org]
[DOI]
(P p)
