Difference between revisions of "YvdF"

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|style="background:#ABCDEF;" align="center"|'''Function''' || starch and maltodextrin utilization
 
|style="background:#ABCDEF;" align="center"|'''Function''' || starch and maltodextrin utilization
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU34620 yvdF]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbohydrate_metabolic_pathways.html Sugar catabolism]'''
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbohydrate_metabolic_pathways.html Sugar catabolism]'''

Revision as of 16:18, 7 August 2012

  • Description: glucan 1,4-alpha-maltohydrolase, neopullulanase, maltogenic amylase

Gene name yvdF
Synonyms
Essential no
Product glucan 1,4-alpha-maltohydrolase, neopullulanase,
maltogenic amylase
Function starch and maltodextrin utilization
Gene expression levels in SubtiExpress: yvdF
Metabolic function and regulation of this protein in SubtiPathways:
Sugar catabolism
MW, pI 68 kDa, 5.178
Gene length, protein length 1767 bp, 589 aa
Immediate neighbours mdxE, yvdE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YvdF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YvdF expression.png




























Categories containing this gene/protein

utilization of specific carbon sources, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU34620

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: BbmA subfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Localization:
    • on both sides of the cytoplasmic membrane and in the periplasm during vegetative growth but in the cytoplasm of prespores PubMed

Database entries

  • Structure: 1J0J (from G. stearothermophilus, 56% identity, complex with maltotetraose), 1J0H (from G. stearothermophilus, 56% identity)
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Jae-Hoon Shim, Jong-Tae Park, Jung-Sun Hong, Ki Woo Kim, Myo-Jeong Kim, Jung-Hyuk Auh, Young-Wan Kim, Cheon-Seok Park, Winfried Boos, Jung-Wan Kim, Kwan-Hwa Park
Role of maltogenic amylase and pullulanase in maltodextrin and glycogen metabolism of Bacillus subtilis 168.
J Bacteriol: 2009, 191(15);4835-44
[PubMed:19465663] [WorldCat.org] [DOI] (I p)

Stefan Schönert, Sabine Seitz, Holger Krafft, Eva-Anne Feuerbaum, Iris Andernach, Gabriele Witz, Michael K Dahl
Maltose and maltodextrin utilization by Bacillus subtilis.
J Bacteriol: 2006, 188(11);3911-22
[PubMed:16707683] [WorldCat.org] [DOI] (P p)

Do-Yeon Kim, Choon-Hwan Cha, Wan-Seok Oh, Young-Jun Yoon, Jung-Wan Kim
Expression of the promoter for the maltogenic amylase gene in Bacillus subtilis 168.
J Microbiol: 2004, 42(4);319-27
[PubMed:15650689] [WorldCat.org] (P p)