Difference between revisions of "YokD"

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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU21630 yokD]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 6.7   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 6.7   

Revision as of 10:50, 7 August 2012

  • Description: similar to aminoglycoside N3'-acetyltransferase

Gene name yokD
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yokD
MW, pI 30 kDa, 6.7
Gene length, protein length 816 bp, 272 aa
Immediate neighbours yokE, yokC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YokD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YokD expression.png
























Categories containing this gene/protein

resistance against toxins/ antibiotics, SP-beta prophage

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU21630

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure: 2NYG, 3IJW (complex with CoA, from B. anthracis)
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Maria M Klimecka, Maksymilian Chruszcz, Jose Font, Tatiana Skarina, Igor Shumilin, Olena Onopryienko, Przemyslaw J Porebski, Marcin Cymborowski, Matthew D Zimmerman, Jeremy Hasseman, Ian J Glomski, Lukasz Lebioda, Alexei Savchenko, Aled Edwards, Wladek Minor
Structural analysis of a putative aminoglycoside N-acetyltransferase from Bacillus anthracis.
J Mol Biol: 2011, 410(3);411-23
[PubMed:21601576] [WorldCat.org] [DOI] (I p)