Difference between revisions of "YcbG"

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* '''Description:''' transcription regulator of the glucarate/galactarate utilization operon ([[GntR family]])<br/><br/>
  
 
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|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of glucarate/galactarate utilization
 
|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of glucarate/galactarate utilization
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU02500 ycbG]
 
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 26 kDa, 5.993   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 26 kDa, 5.993   
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|colspan="2" | '''Genetic context''' <br/> [[Image:ycbG_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ycbG_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ycbG_273237_273938_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ycbG_expression.png|500px]]
 
 
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* '''Operon:''' ''[[ycbC]]-[[ycbD]]-[[ycbE]]-[[ycbF]]-[[ycbG]]-[[ycbH]]-[[ycbJ]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/12044674 PubMed]
 
* '''Operon:''' ''[[ycbC]]-[[ycbD]]-[[ycbE]]-[[ycbF]]-[[ycbG]]-[[ycbH]]-[[ycbJ]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/12044674 PubMed]
  
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ycbG_273237_273938_1 ycbG] {{PubMed|22383849}}
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* '''[[Sigma factor]]:'''  
 
 
* '''Sigma factor:'''  
 
  
 
* '''Regulation:''' induced by D-glucarate/galactarate ([[YcbG]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/12044674 PubMed]
 
* '''Regulation:''' induced by D-glucarate/galactarate ([[YcbG]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/12044674 PubMed]

Revision as of 10:49, 7 August 2012

  • Description: transcription regulator of the glucarate/galactarate utilization operon (GntR family)

Gene name ycbG
Synonyms
Essential no
Product transcription regulator (GntR family)
Function regulation of glucarate/galactarate utilization
MW, pI 26 kDa, 5.993
Gene length, protein length 699 bp, 233 aa
Immediate neighbours ycbF, ycbH
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YcbG context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

utilization of specific carbon sources, transcription factors and their control

This gene is a member of the following regulons

YcbG regulon

The YcbG regulon:

The gene

Basic information

  • Locus tag: BSU02500

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation: induced by D-glucarate/galactarate (YcbG) PubMed
  • Regulatory mechanism: YcbG: transcription repression PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References