Difference between revisions of "RapJ"

From SubtiWiki
Jump to: navigation, search
m (Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk)
Line 1: Line 1:
 
+
* '''Description:''' [[response regulator aspartate phosphatase]]<br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
Line 13: Line 13:
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU02820 rapJ]
 
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 44 kDa, 4.902   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 44 kDa, 4.902   
Line 26: Line 24:
 
|colspan="2" | '''Genetic context''' <br/> [[Image:rapJ_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:rapJ_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
 
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rapJ_304430_305551_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:rapJ_expression.png|500px]]
 
 
|-
 
|-
 
|}
 
|}
  
 
__TOC__
 
__TOC__
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
 
  
 
<br/><br/>
 
<br/><br/>
Line 109: Line 99:
 
* '''Operon:''' ''rapJ'' (according to [http://dbtbs.hgc.jp/COG/prom/rapJ.html DBTBS])
 
* '''Operon:''' ''rapJ'' (according to [http://dbtbs.hgc.jp/COG/prom/rapJ.html DBTBS])
  
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rapJ_304430_305551_1 rapJ] {{PubMed|22383849}}
+
* '''[[Sigma factor]]:'''  
 
 
* '''Sigma factor:'''  
 
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 09:27, 7 August 2012

Gene name rapJ
Synonyms ycdE
Essential no
Product response regulator aspartate phosphatase
Function unknown
MW, pI 44 kDa, 4.902
Gene length, protein length 1119 bp, 373 aa
Immediate neighbours cwlK, ycdF
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
RapJ context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

protein modification, transcription factors and their control

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU02820

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: RAP family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon: rapJ (according to DBTBS)
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Ciaran Condon, IBPC, Paris, France Homepage

Your additional remarks

References