Difference between revisions of "YaaJ"
m (Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk) |
|||
| Line 1: | Line 1: | ||
| − | + | * '''Description:''' tRNA specific adenosine deaminase<br/><br/> | |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 13: | Line 13: | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || tRNA modification | |style="background:#ABCDEF;" align="center"|'''Function''' || tRNA modification | ||
| − | |||
| − | |||
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 17 kDa, 5.636 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 17 kDa, 5.636 | ||
| Line 26: | Line 24: | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yaaJ_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yaaJ_context.gif]] | ||
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | ||
| − | |||
| − | |||
|- | |- | ||
|} | |} | ||
__TOC__ | __TOC__ | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
<br/><br/> | <br/><br/> | ||
| Line 110: | Line 100: | ||
* '''Operon:''''' [[yaaJ]]-[[scr]]'' | * '''Operon:''''' [[yaaJ]]-[[scr]]'' | ||
| − | * | + | * '''[[Sigma factor]]:''' [[SigA]] |
| − | |||
| − | |||
* '''Regulation:''' | * '''Regulation:''' | ||
Revision as of 09:20, 7 August 2012
- Description: tRNA specific adenosine deaminase
| Gene name | yaaJ |
| Synonyms | |
| Essential | no |
| Product | tRNA specific adenosine deaminase |
| Function | tRNA modification |
| MW, pI | 17 kDa, 5.636 |
| Gene length, protein length | 483 bp, 161 aa |
| Immediate neighbours | yaaI, scr |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU00180
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: cytidine and deoxycytidylate deaminase family (according to Swiss-Prot)
- Paralogous protein(s):
- The corresponding gene in E. coli: EcoliWiki
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- UniProt: P21335
- KEGG entry: [3]
- E.C. number: 3.5.4.-
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Takashi Inaoka, Takenori Satomura, Yasutaro Fujita, Kozo Ochi
Novel gene regulation mediated by overproduction of secondary metabolite neotrehalosadiamine in Bacillus subtilis.
FEMS Microbiol Lett: 2009, 291(2);151-6
[PubMed:19087206]
[WorldCat.org]
[DOI]
(I p)
Heather C Losey, Alexander J Ruthenburg, Gregory L Verdine
Crystal structure of Staphylococcus aureus tRNA adenosine deaminase TadA in complex with RNA.
Nat Struct Mol Biol: 2006, 13(2);153-9
[PubMed:16415880]
[WorldCat.org]
[DOI]
(P p)
Jeannette Wolf, André P Gerber, Walter Keller
tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli.
EMBO J: 2002, 21(14);3841-51
[PubMed:12110595]
[WorldCat.org]
[DOI]
(P p)
