Difference between revisions of "YdbS"

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* '''Description:''' resistence against antimicrobial compounds from ''B. amyloliquefaciens'' <br/><br/>
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|style="background:#ABCDEF;" align="center"|'''Function''' || confers resistence against <br/>antimicrobial compounds from ''B. amyloliquefaciens''
 
|style="background:#ABCDEF;" align="center"|'''Function''' || confers resistence against <br/>antimicrobial compounds from ''B. amyloliquefaciens''
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU04590 ydbS]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 17 kDa, 8.13   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 17 kDa, 8.13   

Revision as of 15:16, 6 August 2012


Gene name ydbS
Synonyms
Essential no
Product unknown
Function confers resistence against
antimicrobial compounds from B. amyloliquefaciens
Gene expression levels in SubtiExpress: ydbS
MW, pI 17 kDa, 8.13
Gene length, protein length 477 bp, 159 aa
Immediate neighbours cshA, ydbT
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YdbS context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdbS expression.png
























Categories containing this gene/protein

cell envelope stress proteins (controlled by SigM, V, W, X, Y), resistance against toxins/ antibiotics, membrane proteins

This gene is a member of the following regulons

SigW regulon

The gene

Basic information

  • Locus tag: BSU04590

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0699 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Bronwyn G Butcher, John D Helmann
Identification of Bacillus subtilis sigma-dependent genes that provide intrinsic resistance to antimicrobial compounds produced by Bacilli.
Mol Microbiol: 2006, 60(3);765-82
[PubMed:16629676] [WorldCat.org] [DOI] (P p)

Min Cao, Tao Wang, Rick Ye, John D Helmann
Antibiotics that inhibit cell wall biosynthesis induce expression of the Bacillus subtilis sigma(W) and sigma(M) regulons.
Mol Microbiol: 2002, 45(5);1267-76
[PubMed:12207695] [WorldCat.org] [DOI] (P p)

Min Cao, Phil A Kobel, Maud M Morshedi, Ming Fang Winston Wu, Chris Paddon, John D Helmann
Defining the Bacillus subtilis sigma(W) regulon: a comparative analysis of promoter consensus search, run-off transcription/macroarray analysis (ROMA), and transcriptional profiling approaches.
J Mol Biol: 2002, 316(3);443-57
[PubMed:11866510] [WorldCat.org] [DOI] (P p)