Difference between revisions of "YqiI"
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* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| + | ** cell wall hydrolysis {{PubMed|22843846}} | ||
* '''Protein family:''' N-acetylmuramoyl-L-alanine amidase 3 family (according to Swiss-Prot) | * '''Protein family:''' N-acetylmuramoyl-L-alanine amidase 3 family (according to Swiss-Prot) | ||
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* '''[[Localization]]:''' | * '''[[Localization]]:''' | ||
| + | ** secreted (with N-terminal signal sequence for SEC-mediated transport) {{PubMed|22843846}} | ||
=== Database entries === | === Database entries === | ||
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=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''[[yqiH]]-[[yqiI]]-[[yqiK]]'' {{PubMed|22383849}} | + | * '''Operon:''' ''[[yqiH]]-[[yqiI]]-[[yqiK]]'' {{PubMed|22843846,22383849}} |
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqiI_2514979_2515599_-1 yqiI] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqiI_2514979_2515599_-1 yqiI] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''Sigma factor:''' [[SigA]] {{PubMed|22843846}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ** only expressed under conditions of high osmolarity {{PubMed|22843846}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
Revision as of 10:36, 31 July 2012
- Description: secreted N-acetylmuramoyl-L-alanine amidase
| Gene name | yqiI |
| Synonyms | |
| Essential | no |
| Product | peptidoglycan hydrolase |
| Function | cell wall metabolism |
| MW, pI | 22 kDa, 4.286 |
| Gene length, protein length | 618 bp, 206 aa |
| Immediate neighbours | yqiK, yqiH |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
cell wall degradation/ turnover
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU24190
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- cell wall hydrolysis PubMed
- Protein family: N-acetylmuramoyl-L-alanine amidase 3 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- secreted (with N-terminal signal sequence for SEC-mediated transport) PubMed
Database entries
- Structure:
- UniProt: P54525
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- only expressed under conditions of high osmolarity PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
