Difference between revisions of "SigZ"

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|colspan="2" | '''Genetic context''' <br/> [[Image:sigZ_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:sigZ_context.gif]]
 
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=sigZ_2742244_2742774_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:sigZ_expression.png|500px]]
 
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Revision as of 09:40, 20 April 2012

Gene name sigZ
Synonyms
Essential no
Product RNA polymerase ECF-type sigma factor SigZ
Function transcription
Interactions involving this protein in SubtInteract: SigZ
MW, pI 20 kDa, 6.237
Gene length, protein length 528 bp, 176 aa
Immediate neighbours zinT, yrpG
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
SigZ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
SigZ expression.png


























Categories containing this gene/protein

transcription, sigma factors and their control

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU26840

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ECF subfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Yun Luo, Kei Asai, Yoshito Sadaie, John D Helmann
Transcriptomic and phenotypic characterization of a Bacillus subtilis strain without extracytoplasmic function σ factors.
J Bacteriol: 2010, 192(21);5736-45
[PubMed:20817771] [WorldCat.org] [DOI] (I p)

Thorsten Mascher, Anna-Barbara Hachmann, John D Helmann
Regulatory overlap and functional redundancy among Bacillus subtilis extracytoplasmic function sigma factors.
J Bacteriol: 2007, 189(19);6919-27
[PubMed:17675383] [WorldCat.org] [DOI] (P p)