Difference between revisions of "YtrE"

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* '''Operon:''' ''[[ytrG]]-[[ytrA]]-[[ytrB]]-[[ytrC]]-[[ytrD]]-[[ytrE]]-[[ytrF]]''  {{PubMed|10986249,21856850}}  
 
* '''Operon:''' ''[[ytrG]]-[[ytrA]]-[[ytrB]]-[[ytrC]]-[[ytrD]]-[[ytrE]]-[[ytrF]]''  {{PubMed|10986249,21856850}}  
  
* '''[[Sigma factor]]:''' [[SigA]]  {{PubMed|10986249}}  
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ytrE_3115279_3115974_-1 ytrE] {{PubMed|22383849}}
 +
 
 +
* '''Sigma factor:''' [[SigA]]  {{PubMed|10986249}}  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
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** [[YtrA]]: transcription repression {{PubMed|10986249,21856850}}  
 
** [[YtrA]]: transcription repression {{PubMed|10986249,21856850}}  
  
* '''Additional information:'''  
+
* '''Additional information:'''
  
 
=Biological materials =
 
=Biological materials =

Revision as of 15:48, 16 April 2012

Gene name ytrE
Synonyms
Essential no
Product ABC transporter (ATP-binding protein)
Function unknown
Interactions involving this protein in SubtInteract: YtrE
Metabolic function and regulation of this protein in SubtiPathways:
Central C-metabolism
MW, pI 25 kDa, 5.98
Gene length, protein length 693 bp, 231 aa
Immediate neighbours ytrF, ytrD
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YtrE context.gif
This image was kindly provided by SubtiList







Categories containing this gene/protein

ABC transporters, cold stress proteins, membrane proteins

This gene is a member of the following regulons

YtrA regulon

The gene

Basic information

  • Locus tag: BSU30420

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • induced by ramoplanin (YtrA) PubMed
    • expressed early in the stationary phase PubMed
    • induced by cold shock (6-fold) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed