Difference between revisions of "SipW"

From SubtiWiki
Jump to: navigation, search
(→‎Reviews)
Line 13: Line 13:
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || [[biofilm formation]]
 
|style="background:#ABCDEF;" align="center"|'''Function''' || [[biofilm formation]]
 +
|-
 +
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SipW SipW]
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm], [http://subtiwiki.uni-goettingen.de/wiki/index.php/Protein_secretion Protein secretion]'''
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm], [http://subtiwiki.uni-goettingen.de/wiki/index.php/Protein_secretion Protein secretion]'''
Line 65: Line 67:
 
* '''Catalyzed reaction/ biological activity:'''
 
* '''Catalyzed reaction/ biological activity:'''
 
** important for [[biofilm formation]] on a solid surface, but not required at an air-liquid interface {{PubMed|22328672}}
 
** important for [[biofilm formation]] on a solid surface, but not required at an air-liquid interface {{PubMed|22328672}}
−
** Cleavage of hydrophobic, N-terminal signal or leader sequences from [[TasA]] and [[TapA]]  
+
** Cleavage of hydrophobic, N-terminal signal or leader sequences from [[TasA]] and [[TapA]] {{PubMed|10049401,10559173}}
  
 
* '''Protein family:''' peptidase S26B family (according to Swiss-Prot)
 
* '''Protein family:''' peptidase S26B family (according to Swiss-Prot)
Line 84: Line 86:
  
 
* '''[[SubtInteract|Interactions]]:'''
 
* '''[[SubtInteract|Interactions]]:'''
 +
** [[SipW]]-[[TapA]] {{PubMed|10559173}}
 +
** [[SipW]]-[[TasA]] {{PubMed|10049401}}
  
 
* '''[[Localization]]:'''
 
* '''[[Localization]]:'''
−
** membrane
+
** membrane {{PubMed|22328672}}
  
 
=== Database entries ===
 
=== Database entries ===
Line 155: Line 159:
 
  [http://www.ncbi.nlm.nih.gov/pubmed/21856853 PubMed:21856853]
 
  [http://www.ncbi.nlm.nih.gov/pubmed/21856853 PubMed:21856853]
  
−
<pubmed>18047568,15175311,16430695,10368135,9694797,18430133,18647168,10464223,17720793, 20351052 10827084 21477127 </pubmed>
+
<pubmed>18047568,15175311,16430695,10368135,9694797,18430133,18647168,10464223,17720793, 20351052 10827084 21477127 10559173 </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 09:29, 23 March 2012

Gene name sipW
Synonyms yqhE
Essential no
Product signal peptidase I
Function biofilm formation
Interactions involving this protein in SubtInteract: SipW
Regulation of this protein in SubtiPathways:
Biofilm, Protein secretion
MW, pI 20 kDa, 5.494
Gene length, protein length 570 bp, 190 aa
Immediate neighbours tasA, tapA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
SipW context.gif
This image was kindly provided by SubtiList







Categories containing this gene/protein

protein secretion, biofilm formation, membrane proteins

This gene is a member of the following regulons

AbrB regulon, SinR regulon

The gene

Basic information

  • Locus tag: BSU24630

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
    • important for biofilm formation on a solid surface, but not required at an air-liquid interface PubMed
    • Cleavage of hydrophobic, N-terminal signal or leader sequences from TasA and TapA PubMed
  • Protein family: peptidase S26B family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Additional reviews: PubMed

Adam Driks
Tapping into the biofilm: insights into assembly and disassembly of a novel amyloid fibre in Bacillus subtilis.
Mol Microbiol: 2011, 80(5);1133-6
[PubMed:21488983] [WorldCat.org] [DOI] (I p)


Original publications

Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J  
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. 
Mol Microbiol. 2011 81(6): 1459-1473. 
PubMed:21815947

Diethmaier C, Pietack N, Gunka K, Wrede C, Lehnik-Habrink M, Herzberg C, Hübner S, Stülke J  
A Novel Factor Controlling Bistability in Bacillus subtilis: The YmdB Protein Affects
Flagellin Expression and Biofilm Formation. 
J Bacteriol.: 2011, 193(21):5997-6007. 
PubMed:21856853

Retrieved from "https://subtiwiki.uni-goettingen.de/wiki//index.php?title=SipW&oldid=154928"