Difference between revisions of "YpsC"

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* '''Description:''' similar to 23S rRNA m2G2445 methyltransferase<br/><br/>
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* '''Description:''' similar to SAM-dependent 23S rRNA methyltransferase <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
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|style="background:#ABCDEF;" align="center"| '''Product''' || 23S rRNA methyltransferase
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
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|style="background:#ABCDEF;" align="center"|'''Function''' || rRNA modification
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 43 kDa, 8.011   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 43 kDa, 8.011   
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=== Additional information===
 
=== Additional information===
 
  
 
=The protein=
 
=The protein=
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=References=
 
=References=
 
+
<pubmed> 17010378 </pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 17:46, 28 February 2011

  • Description: similar to SAM-dependent 23S rRNA methyltransferase

Gene name ypsC
Synonyms
Essential no
Product 23S rRNA methyltransferase
Function rRNA modification
MW, pI 43 kDa, 8.011
Gene length, protein length 1155 bp, 385 aa
Immediate neighbours yptA, rnpB
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YpsC context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU22170

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Dmitry V Lesnyak, Petr V Sergiev, Alexey A Bogdanov, Olga A Dontsova
Identification of Escherichia coli m2G methyltransferases: I. the ycbY gene encodes a methyltransferase specific for G2445 of the 23 S rRNA.
J Mol Biol: 2006, 364(1);20-5
[PubMed:17010378] [WorldCat.org] [DOI] (P p)