Difference between revisions of "CatD"
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* '''Operon:''' ''[[catD]]-[[catE]]'' {{PubMed|16872404}} | * '''Operon:''' ''[[catD]]-[[catE]]'' {{PubMed|16872404}} | ||
| − | * '''[[Sigma factor]]:''' | + | * '''[[Sigma factor]]:''' [[SigA]] {{PubMed|20639328}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| − | ** strong induction by catechol {{PubMed|16872404}} | + | ** strong induction by diamide and quinones (such as catechol) ([[YodB]], [[CatR]]) {{PubMed|16872404,20639328}} |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| + | ** [[YodB]]: transcription repression {{PubMed|20639328}} | ||
| + | ** [[CatR]]: transcription repression {{PubMed|20639328}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 118: | Line 120: | ||
=References= | =References= | ||
| − | <pubmed>17407181,16872404 , </pubmed> | + | <pubmed>17407181,16872404 , 20639328 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 10:38, 20 July 2010
- Description: essential for viability in the presence of catechol
| Gene name | catD |
| Synonyms | yfiD |
| Essential | no |
| Product | unknown |
| Function | viability in the presence of catechol |
| MW, pI | 14 kDa, 10.115 |
| Gene length, protein length | 402 bp, 134 aa |
| Immediate neighbours | yfiC, catE |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
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Contents
The gene
Basic information
- Locus tag: BSU08230
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization: cell membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: P54720
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
