Difference between revisions of "RpsQ"

From SubtiWiki
Jump to: navigation, search
Line 91: Line 91:
  
 
=Expression and regulation=
 
=Expression and regulation=
 
+
* '''Operon:''' ''[[rpsJ]]-[[rplC]]-[[rplD]]-[[rplW]]-[[rplB]]-[[rpsS]]-[[rplV]]-[[rpsC]]-[[rplP]]-[[rpmC]]-[[rpsQ]]-[[rplN]]-[[rplX]]-[[rplE]]-[[rpsN]]-[[rpsH]]-[[rplF]]-[[rplR]]-[[rpsE]]-[[rpmD]]-[[rplO]]'' {{PubMed|9371452}}
* '''Operon:'''  
 
  
 
* '''Sigma factor:'''  
 
* '''Sigma factor:'''  
 +
** [[SigA]] two promoters, about 140bp and 200bp upstream of the start codon {{PubMed|9371452}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
Line 123: Line 123:
 
=References=
 
=References=
  
<pubmed>8635744,19653700 </pubmed>
+
<pubmed>8635744,19653700 9371452 11948165</pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 19:49, 16 June 2010

Gene name rpsQ
Synonyms
Essential yes PubMed
Product ribosomal protein S17 (BS16)
Function translation
MW, pI 10 kDa, 10.367
Gene length, protein length 261 bp, 87 aa
Immediate neighbours rpmC, rplN
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
RpsQ context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU01250

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure: 1RIP (Geobacillus stearothermophilus)
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
    • SigA two promoters, about 140bp and 200bp upstream of the start codon PubMed
  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References