Difference between revisions of "RpmC"

From SubtiWiki
Jump to: navigation, search
Line 89: Line 89:
  
 
=Expression and regulation=
 
=Expression and regulation=
 
+
* '''Operon:''' ''[[rpsJ]]-[[rplC]]-[[rplD]]-[[rplW]]-[[rplB]]-[[rpsS]]-[[rplV]]-[[rpsC]]-[[rplP]]-[[rpmC]]-[[rpsQ]]-[[rplN]]-[[rplX]]-[[rplE]]-[[rpsN]]-[[rpsH]]-[[rplF]]-[[rplR]]-[[rpsE]]-[[rpmD]]-[[rplO]]'' {{PubMed|9371452}}
* '''Operon:'''  
 
  
 
* '''Sigma factor:'''  
 
* '''Sigma factor:'''  
 +
** [[SigA]] two promoters, about 140bp and 200bp upstream of the start codon {{PubMed|9371452}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
Line 121: Line 121:
 
=References=
 
=References=
  
<pubmed>8635744,19653700 </pubmed>
+
<pubmed>8635744,19653700 9371452 11948165</pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 19:48, 16 June 2010

Gene name rpmC
Synonyms
Essential yes PubMed
Product ribosomal protein L29
Function translation
MW, pI 7 kDa, 10.628
Gene length, protein length 198 bp, 66 aa
Immediate neighbours rplP, rpsQ
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
RpmC context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU01240

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
    • SigA two promoters, about 140bp and 200bp upstream of the start codon PubMed
  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References