Difference between revisions of "YcdF"
(→Expression and regulation) |
|||
| Line 87: | Line 87: | ||
=Expression and regulation= | =Expression and regulation= | ||
| + | * '''Operon:''' ''[[ycdF]]-[[ycdG]]'' {{PubMed|15805528}} | ||
| − | * ''' | + | * '''[[Sigma factor]]:''' [[SigB]] {{PubMed|15805528}} |
| − | * ''' | + | * '''Regulation:''' |
| − | + | ** induced by stress ([[SigB]]) {{PubMed|15805528}} | |
| − | * | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| − | * '''Additional information:''' | + | * '''Additional information:''' |
=Biological materials = | =Biological materials = | ||
Revision as of 17:22, 13 February 2010
- Description: general stress protein, similar to glucose 1-dehydrogenase, survival of ethanol stress and low temperatures
| Gene name | ycdF |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | survival of ethanol stress and low temperatures |
| MW, pI | 27 kDa, 5.738 |
| Gene length, protein length | 774 bp, 258 aa |
| Immediate neighbours | rapJ, ycdG |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU02830
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Beta-D-glucose + NAD(P)+ = D-glucono-1,5-lactone + NAD(P)H (according to Swiss-Prot)
- Protein family: short-chain dehydrogenases/reductases (SDR) family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: P80869
- KEGG entry: [2]
- E.C. number: 1.1.1.47
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528]
[WorldCat.org]
[DOI]
(P p)
Anja Petersohn, Haike Antelmann, Ulf Gerth, Michael Hecker
Identification and transcriptional analysis of new members of the sigmaB regulon in Bacillus subtilis.
Microbiology (Reading): 1999, 145 ( Pt 4);869-880
[PubMed:10220166]
[WorldCat.org]
[DOI]
(P p)
