Difference between revisions of "YtrD"

From SubtiWiki
Jump to: navigation, search
(Extended information on the protein)
Line 95: Line 95:
 
* '''Regulation:'''  
 
* '''Regulation:'''  
 
** expressed early in the stationary phase  {{PubMed|10986249}}  
 
** expressed early in the stationary phase  {{PubMed|10986249}}  
 +
** induced by cold shock (5-fold) {{PubMed|12399512}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
Line 121: Line 122:
 
=References=
 
=References=
  
<pubmed>10986249,10092453, </pubmed>
+
<pubmed>10986249,10092453,12399512 </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 07:58, 31 January 2010

  • Description: acetoin ABC transporter (hydrophobic protein, probably channel protein)

Gene name ytrD
Synonyms
Essential no
Product acetoin ABC transporter
(hydrophobic protein, probably channel protein)
Function uptake of acetoin
Metabolic function and regulation of this protein in SubtiPathways:
Central C-metabolism
MW, pI 36 kDa, 9.094
Gene length, protein length 975 bp, 325 aa
Immediate neighbours ytrE, ytrC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YtrD context.gif
This image was kindly provided by SubtiList







The gene

Basic information

  • Locus tag: BSU30430

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ABC-5 integral membrane protein family (according to Swiss-Prot)
  • Paralogous protein(s): YtrC

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Localization: cell membrane (according to Swiss-Prot)

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed early in the stationary phase PubMed
    • induced by cold shock (5-fold) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Carsten L Beckering, Leif Steil, Michael H W Weber, Uwe Völker, Mohamed A Marahiel
Genomewide transcriptional analysis of the cold shock response in Bacillus subtilis.
J Bacteriol: 2002, 184(22);6395-402
[PubMed:12399512] [WorldCat.org] [DOI] (P p)

K I Yoshida, Y Fujita, S D Ehrlich
An operon for a putative ATP-binding cassette transport system involved in acetoin utilization of Bacillus subtilis.
J Bacteriol: 2000, 182(19);5454-61
[PubMed:10986249] [WorldCat.org] [DOI] (P p)

Y Quentin, G Fichant, F Denizot
Inventory, assembly and analysis of Bacillus subtilis ABC transport systems.
J Mol Biol: 1999, 287(3);467-84
[PubMed:10092453] [WorldCat.org] [DOI] (P p)