Difference between revisions of "WalR"
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* '''Paralogous protein(s):''' | * '''Paralogous protein(s):''' | ||
| − | === Genes controlled by WalR === | + | === Genes controlled by WalR {{PubMed|17581128}}=== |
| − | + | * '''Activation by WalR:''' ''[[cwlO]]'', ''[[lytE]]'', ''[[ydjM]]'', ''[[yocH]]'', ''[[ftsA]]-[[ftsZ]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/10878122 PubMed] | |
| − | * '''Activation by WalR:''' ''[[cwlO]]'' | + | * '''Repression by WalR:''' ''[[iseA]]'', ''[[yjeA]]'' |
| − | |||
| − | * '''Repression by WalR:''' ''[[iseA]]'' | ||
=== Extended information on the protein === | === Extended information on the protein === | ||
| Line 128: | Line 126: | ||
<pubmed>19019149,,18792692,</pubmed> | <pubmed>19019149,,18792692,</pubmed> | ||
==Original Publications== | ==Original Publications== | ||
| − | <pubmed>18573169,17350627,10094672,17827301,9829949,17581128,10878122,16030236,12950927, 19574649, </pubmed> | + | <pubmed>18573169,17350627,10094672,17827301,9829949,17581128,10878122,16030236,12950927, 19574649, 20059685 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 11:29, 12 January 2010
- Description: two-component response regulator, controls cell wall metabolism
| Gene name | walR |
| Synonyms | yycF |
| Essential | yes PubMed |
| Product | two-component response regulator |
| Function | control of cell wall metabolism |
| MW, pI | 27 kDa, 4.876 |
| Gene length, protein length | 705 bp, 235 aa |
| Immediate neighbours | walK, trnY-Phe |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU40410
Phenotypes of a mutant
essential PubMed
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: OmpR family of two-component transcription regulators
- Paralogous protein(s):
Genes controlled by WalR PubMed
Extended information on the protein
- Kinetic information:
- Domains:
- Modification: phosphorylated by WalK on an Asp residue
- Cofactor(s):
- Effectors of protein activity: phosphorylation likely affects DNA-binding activity
- Localization: cytoplasm (according to Swiss-Prot)
Database entries
- UniProt: P37478
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation: expressed during vegetative growth, repressed during stationary phase PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
Sarah Dubrac, Paola Bisicchia, Kevin M Devine, Tarek Msadek
A matter of life and death: cell wall homeostasis and the WalKR (YycGF) essential signal transduction pathway.
Mol Microbiol: 2008, 70(6);1307-22
[PubMed:19019149]
[WorldCat.org]
[DOI]
(I p)
Sarah Dubrac, Tarek Msadek
Tearing down the wall: peptidoglycan metabolism and the WalK/WalR (YycG/YycF) essential two-component system.
Adv Exp Med Biol: 2008, 631;214-28
[PubMed:18792692]
[WorldCat.org]
[DOI]
(P p)
Original Publications
