Difference between revisions of "YdaF"

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* '''[[Sigma factor]]:''' [[SigB]] {{PubMed|10220166}}
 
* '''[[Sigma factor]]:''' [[SigB]] {{PubMed|10220166}}
  
* '''Regulation:''' induced under stress conditions ([[SigB]]) {{PubMed|10220166}}
+
* '''Regulation:'''  
 +
** induced under stress conditions ([[SigB]]) {{PubMed|10220166}}
 +
** repressed during logarithmic phase ([[AbrB]]) {{PubMed|18840696}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
 +
** [[AbrB]]: transcription repression {{PubMed|18840696}}
  
 
* '''Additional information:'''  
 
* '''Additional information:'''  
Line 117: Line 120:
  
 
=References=
 
=References=
<pubmed> 10220166</pubmed>
+
<pubmed> 10220166 18840696</pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 22:26, 11 December 2009

  • Description: similar to acetyltransferase

Gene name ydaF
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 20 kDa, 5.564
Gene length, protein length 549 bp, 183 aa
Immediate neighbours ydaE, ydaG
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YdaF context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU04210

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: N-acetyltransferase domain (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Allison V Banse, Arnaud Chastanet, Lilah Rahn-Lee, Errett C Hobbs, Richard Losick
Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis.
Proc Natl Acad Sci U S A: 2008, 105(40);15547-52
[PubMed:18840696] [WorldCat.org] [DOI] (I p)

Anja Petersohn, Haike Antelmann, Ulf Gerth, Michael Hecker
Identification and transcriptional analysis of new members of the sigmaB regulon in Bacillus subtilis.
Microbiology (Reading): 1999, 145 ( Pt 4);869-880
[PubMed:10220166] [WorldCat.org] [DOI] (P p)