Difference between revisions of "YteR"
| Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || galacturonyl hydrolase, catalyses intracellular degradation of disaccharides generated by [[YesX]] | + | |style="background:#ABCDEF;" align="center"| '''Product''' || galacturonyl hydrolase, catalyses intracellular degradation <br/>of disaccharides generated by [[YesX]] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || intracellular degradation of disaccharides generated by [[YesX]] | |style="background:#ABCDEF;" align="center"|'''Function''' || intracellular degradation of disaccharides generated by [[YesX]] | ||
| Line 18: | Line 18: | ||
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1119 bp, 373 aa | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1119 bp, 373 aa | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yteS]]'', ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yteS]]'', ''[[yteP]]'' |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB14990]+-newId sequences] <br/> (Barbe ''et al.'', 2009)''' | |colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB14990]+-newId sequences] <br/> (Barbe ''et al.'', 2009)''' | ||
Revision as of 20:25, 4 December 2009
- Description: galacturonyl hydrolase, catalyses intracellular degradation of disaccharides generated by YesX
| Gene name | yteR |
| Synonyms | |
| Essential | no |
| Product | galacturonyl hydrolase, catalyses intracellular degradation of disaccharides generated by YesX |
| Function | intracellular degradation of disaccharides generated by YesX |
| MW, pI | 42 kDa, 5.87 |
| Gene length, protein length | 1119 bp, 373 aa |
| Immediate neighbours | yteS, yteP |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU30120
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: glycosyl hydrolase 105 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization: cytoplasm (according to Swiss-Prot)
Database entries
- UniProt: O34559
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information: the mRNA is very stable (half-life > 15 min) PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Takafumi Itoh, Akihito Ochiai, Bunzo Mikami, Wataru Hashimoto, Kousaku Murata
A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide.
J Mol Biol: 2006, 360(3);573-85
[PubMed:16781735]
[WorldCat.org]
[DOI]
(P p)
G Hambraeus, C von Wachenfeldt, L Hederstedt
Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAs.
Mol Genet Genomics: 2003, 269(5);706-14
[PubMed:12884008]
[WorldCat.org]
[DOI]
(P p)
