Difference between revisions of "YdiP"
| Line 12: | Line 12: | ||
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown | |style="background:#ABCDEF;" align="center"| '''Product''' || unknown | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || BsuM DNA modification |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 43 kDa, 6.435 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 43 kDa, 6.435 | ||
| Line 41: | Line 41: | ||
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| − | essential [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed] | + | essential [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed], mutation is only possible in a ''[[ydiR]]'', ''[[ydiS]]'', or ''[[ydjA]]'' background (''i. e.'', in the absence of the BsuM DNA restriction system) {{PubMed|11751814}} |
=== Database entries === | === Database entries === | ||
| Line 92: | Line 92: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''[[ydiO]]-[[ydiP]]'' {{PubMed|11751814}} |
* '''[[Sigma factor]]:''' | * '''[[Sigma factor]]:''' | ||
* '''Regulation:''' | * '''Regulation:''' | ||
| − | ** | + | ** induced by DNA damage ([[LexA]]) {{PubMed|16267290}} |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| − | ** [[LexA]]: transcription repression | + | ** [[LexA]]: transcription repression {{PubMed|16267290}} |
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 124: | Line 124: | ||
=References= | =References= | ||
| − | <pubmed>16267290, </pubmed> | + | <pubmed>16267290,11751814 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 19:14, 23 August 2009
- Description: similar to DNA-3-methyladenine glycosidase II
| Gene name | ydiP |
| Synonyms | |
| Essential | yes PubMed |
| Product | unknown |
| Function | BsuM DNA modification |
| MW, pI | 43 kDa, 6.435 |
| Gene length, protein length | 1167 bp, 389 aa |
| Immediate neighbours | ydiO, ydiQ |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU06070
Phenotypes of a mutant
essential PubMed, mutation is only possible in a ydiR, ydiS, or ydjA background (i. e., in the absence of the BsuM DNA restriction system) PubMed
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: O34680
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Nora Au, Elke Kuester-Schoeck, Veena Mandava, Laura E Bothwell, Susan P Canny, Karen Chachu, Sierra A Colavito, Shakierah N Fuller, Eli S Groban, Laura A Hensley, Theresa C O'Brien, Amish Shah, Jessica T Tierney, Louise L Tomm, Thomas M O'Gara, Alexi I Goranov, Alan D Grossman, Charles M Lovett
Genetic composition of the Bacillus subtilis SOS system.
J Bacteriol: 2005, 187(22);7655-66
[PubMed:16267290]
[WorldCat.org]
[DOI]
(P p)
Hideyuki Ohshima, Satoshi Matsuoka, Kei Asai, Yoshito Sadaie
Molecular organization of intrinsic restriction and modification genes BsuM of Bacillus subtilis Marburg.
J Bacteriol: 2002, 184(2);381-9
[PubMed:11751814]
[WorldCat.org]
[DOI]
(P p)
