Difference between revisions of "YjmD"

From SubtiWiki
Jump to: navigation, search
Line 92: Line 92:
 
** ''[[yjmC]]-[[yjmD]]-[[uxuA]]-[[yjmF]]-[[exuT]]-[[exuR]]-[[uxaB]]-[[uxaA]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/9882655 PubMed]
 
** ''[[yjmC]]-[[yjmD]]-[[uxuA]]-[[yjmF]]-[[exuT]]-[[exuR]]-[[uxaB]]-[[uxaA]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/9882655 PubMed]
  
* '''[[Sigma factor]]:'''  
+
* '''[[Sigma factor]]:''' [[SigE]] {{PubMed|15699190}}
 
** ''[[uxaC]]'': [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/9882655 PubMed]
 
** ''[[uxaC]]'': [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/9882655 PubMed]
 
** ''[[yjmC]]'': [[SigE]] [http://www.ncbi.nlm.nih.gov/sites/entrez/9882655 PubMed]
 
** ''[[yjmC]]'': [[SigE]] [http://www.ncbi.nlm.nih.gov/sites/entrez/9882655 PubMed]

Revision as of 14:36, 31 July 2009

  • Description: galactitol-1-phosphate dehydrogenase

Gene name yjmD
Synonyms
Essential no
Product galactitol-1-phosphate dehydrogenase
Function untilization of dulcitol
MW, pI 36 kDa, 6.115
Gene length, protein length 1017 bp, 339 aa
Immediate neighbours yjmC, uxuA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YjmD context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU12330

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: zinc-containing alcohol dehydrogenase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Y Miwa, A Nakata, A Ogiwara, M Yamamoto, Y Fujita
Evaluation and characterization of catabolite-responsive elements (cre) of Bacillus subtilis.
Nucleic Acids Res: 2000, 28(5);1206-10
[PubMed:10666464] [WorldCat.org] [DOI] (I p)

K R Mekjian, E M Bryan, B W Beall, C P Moran
Regulation of hexuronate utilization in Bacillus subtilis.
J Bacteriol: 1999, 181(2);426-33
[PubMed:9882655] [WorldCat.org] [DOI] (P p)

Carlo Rivolta, Blazenka Soldo, Vladimir Lazarevic, Bernard Joris, Catherine Mauël, Dimitri Karamat
A 35.7 kb DNA fragment from the Bacillus subtilis chromosome containing a putative 12.3 kb operon involved in hexuronate catabolism and a perfectly symmetrical hypothetical catabolite-responsive element.
Microbiology (Reading): 1998, 144 ( Pt 4);877-884
[PubMed:9579062] [WorldCat.org] [DOI] (P p)