Difference between revisions of "Sandbox"
| Line 1: | Line 1: | ||
| − | * '''Description:''' 23S rRNA <br/><br/> | + | * '''Description:''' 23S rRNA<br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |'' | + | |''rrnO-23S'' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | ||
| Line 14: | Line 14: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || translation | |style="background:#ABCDEF;" align="center"|'''Function''' || translation | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Gene length''' || | + | |style="background:#ABCDEF;" align="center"| '''Gene length''' || 2928 bp |
|-|- | |-|- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[trnO-Ala]]'', ''[[rrnO-5S]]'' |
|- | |- | ||
| − | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ | + | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rrnO-23S_nucleotide.txt Gene sequence (+200bp) ]''' |
|style="background:#FAF8CC;" align="center"|''' ''' | |style="background:#FAF8CC;" align="center"|''' ''' | ||
|- | |- | ||
| − | |colspan="2" | '''Genetic context''' <br/> [[Image: | + | |colspan="2" | '''Genetic context''' <br/> [[Image:rrnO-23S_context.gif]] |
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | ||
|- | |- | ||
| Line 29: | Line 29: | ||
__TOC__ | __TOC__ | ||
| − | <br/><br/> | + | <br/><br/><br/><br/><br/><br/> |
| − | |||
=The gene= | =The gene= | ||
| Line 44: | Line 43: | ||
* '''DBTBS entry:''' no entry | * '''DBTBS entry:''' no entry | ||
| − | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+ | + | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00008] |
| − | + | ||
* '''Structure:''' | * '''Structure:''' | ||
| Line 52: | Line 51: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''rrnO'' operon (''[[rrnO-16S]] - [[trnO-Ile]] - [[trnO-Ala]] -[[rrnO-23S]] - [[rrnO-5S]]'') [http://www.ncbi.nlm.nih.gov/sites/entrez/6312418 PubMed] |
| − | * '''Sigma factor:''' | + | * '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/6312418 PubMed] |
* '''Regulation:''' | * '''Regulation:''' | ||
| Line 72: | Line 71: | ||
* '''GFP fusion:''' | * '''GFP fusion:''' | ||
| − | =Labs working on this gene/ | + | * '''two-hybrid system:''' |
| + | |||
| + | * '''Antibody:''' | ||
| + | |||
| + | =Labs working on this gene/protein= | ||
=Your additional remarks= | =Your additional remarks= | ||
| Line 78: | Line 81: | ||
=References= | =References= | ||
| − | <pubmed> | + | <pubmed>6312418, </pubmed> |
| − | # | + | # Ogasawara et al. (1983) Structure and organization of rRNA operons in the region of the replication origin of the ''Bacillus subtilis'' chromosome.''Nucl. Acids Res.'' '''11:''' 6301-6318. [http://www.ncbi.nlm.nih.gov/sites/entrez/6312418 PubMed] |
| − | |||
Revision as of 13:35, 8 June 2009
- Description: 23S rRNA
| Gene name | rrnO-23S |
| Synonyms | |
| Essential | no |
| Product | ribosomal RNA-23S |
| Function | translation |
| Gene length | 2928 bp |
| Immediate neighbours | trnO-Ala, rrnO-5S |
| Gene sequence (+200bp) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag:
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
- Structure:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
N Ogasawara, S Moriya, H Yoshikawa
Structure and organization of rRNA operons in the region of the replication origin of the Bacillus subtilis chromosome.
Nucleic Acids Res: 1983, 11(18);6301-18
[PubMed:6312418]
[WorldCat.org]
[DOI]
(P p)
- Ogasawara et al. (1983) Structure and organization of rRNA operons in the region of the replication origin of the Bacillus subtilis chromosome.Nucl. Acids Res. 11: 6301-6318. PubMed
