Difference between revisions of "Ddl"

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=== Basic information ===
 
=== Basic information ===
  
* '''Locus tag:'''
+
* '''Locus tag:''' BSU04560
  
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
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* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P96612 P96612]
 
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P96612 P96612]
  
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU04560 BSU04560]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU04560]
  
 
* '''E.C. number:''' [http://www.expasy.org/enzyme/6.3.2.4 6.3.2.4]
 
* '''E.C. number:''' [http://www.expasy.org/enzyme/6.3.2.4 6.3.2.4]

Revision as of 13:42, 3 June 2009

  • Description: D-alanine-D-alanine ligase

Gene name ddl
Synonyms ddlA
Essential yes PubMed
Product D-alanine-D-alanine ligase
Function peptidoglycan precursor biosynthesis
MW, pI 38 kDa, 4.58
Gene length, protein length 1062 bp, 354 aa
Immediate neighbours ydbP, murF
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
Ddl context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU04560

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine (according to Swiss-Prot)
  • Protein family: ATP-grasp domain (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cytoplasm (according to Swiss-Prot)

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed