Difference between revisions of "RrnB-16S"

From SubtiWiki
Jump to: navigation, search
(References)
(Expression and regulation)
Line 52: Line 52:
 
=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''rrnB'' (''[[trnB-Glu]]- [[trnB-Ser2]]- [[trnB-Asn]]- [[trnB-Ile2]]- [[trnB-Gly2]]- [[trnB-Phe]]- [[trnB-His]]- [[trnB-Asp]]- [[trnB-Met2]]- [[trnB-Ser1]]- [[trnB-Met3]]- [[trnB-Met1]]- [[trnB-Ala]]- [[trnB-Pro]]- [[trnB-Arg]]- [[trnB-Gly1]]- [[trnB-Leu2]]- [[trnB-Leu1]]- [[trnB-Lys]]- [[trnB-Thr]]- [[trnB-Val]]- [[rrnB-5S]]- [[rrnB-23S]]- [[rrnB-16S]]'')  [http://www.ncbi.nlm.nih.gov/sites/entrez/2414156 PubMed]
+
* '''Operon:''' ''rrnB'' (''[[rrnB-16S]]-[[rrnB-23S]]-[[rrnB-5S]]-[[trnB-Val]]-[[trnB-Thr]]- [[trnB-Lys]]-[[trnB-Leu1]]-[[trnB-Leu2]]-[[trnB-Gly1]]-[[trnB-Arg]]-[[trnB-Pro]]-[[trnB-Ala]]- [[trnB-Met1]]-[[trnB-Met3]]-[[trnB-Ser1]]- [[trnB-Met2]]-[[trnB-Asp]]-[[trnB-His]]-[[trnB-Phe]]- [[trnB-Gly2]]-[[trnB-Ile2]]-[[trnB-Asn]]-[[trnB-Ser2]]- [[trnB-Glu]]'')  [http://www.ncbi.nlm.nih.gov/sites/entrez/2414156 PubMed]
  
 
* '''Sigma factor:'''  
 
* '''Sigma factor:'''  

Revision as of 11:58, 22 May 2009

  • Description: 16S rRNA

Gene name rrnB-16S
Synonyms
Essential no
Product ribosomal RNA-16S
Function translation
Gene length 1550 bp
Immediate neighbours rrnB-23S, thiT
Gene sequence (+200bp)
Genetic context
RrnB-16S context.gif
This image was kindly provided by SubtiList








The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]
  • Structure:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:

Labs working on this gene/RNA

Your additional remarks

References

Yousuke Natori, Kazumi Tagami, Kana Murakami, Sawako Yoshida, Osamu Tanigawa, Yoonsuh Moh, Kenta Masuda, Tetsuya Wada, Shota Suzuki, Hideaki Nanamiya, Yuzuru Tozawa, Fujio Kawamura
Transcription activity of individual rrn operons in Bacillus subtilis mutants deficient in (p)ppGpp synthetase genes, relA, yjbM, and ywaC.
J Bacteriol: 2009, 191(14);4555-61
[PubMed:19447912] [WorldCat.org] [DOI] (I p)

C J Green, G C Stewart, M A Hollis, B S Vold, K F Bott
Nucleotide sequence of the Bacillus subtilis ribosomal RNA operon, rrnB.
Gene: 1985, 37(1-3);261-6
[PubMed:2414156] [WorldCat.org] [DOI] (P p)